Introduction
The customized protein database on the basis of RNA-Seq data has been proposed to assist the peptide/protein identification in proteomics. The strategy based on searching this database can improve the sensitivity of the peptide identification. The PGA package provides functions for construction of customized protein databases based on RNA-Seq data, database searching, post-processing and report generation.
Usage
You can find the tutorial about how to using PGA in Bioconductor.Report Examples
You can find a demo report generated by PGA here: Demo 1.Download and Installation
The R package is available from Bioconductor and can be installed directly from R:
source("http://bioconductor.org/biocLite.R")
biocLite("PGA")
Support or Contact
If you have any questions when using PGA, please open an issue here: Github issue and I’ll help you sort it out.