metaX

HitCount

metaX: An Automatic and Comprehensive Pipeline for Processing Untargeted Metabolomics Data. Please go to the website of metaX to find more information about metaX: http://metax.genomics.cn.

Join the chat at https://gitter.im/metaX-metabolomics/Lobby

<img src=”https://github.com/wenbostar/metaX/blob/master/inst/extdata/metaX_pipeline.PNG” width=800 class=”center”>

Installation

# Install the development version from GitHub:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
install.packages("remotes")
BiocManager::install("wenbostar/metaX")

Usage

Please follow the instruction in website metaX

Citation

To cite the metaX package in publications, please use:

Wen B, Mei Z, Zeng C, et al. metaX: a flexible and comprehensive software for processing metabolomics data. BMC bioinformatics, 2017, 18(1): 183. DOI: 10.1186/s12859-017-1579-y

Contribution

Contributions to the package are more than welcome.

Function request

I’m working on developing a new version of metaX. If you have any new functions which you want to be added into metaX, please feel free to open an issue to describe what you want. I will discuss with you about how to implement that in the new version.